[.projections

"subset.projections"

"[.projections"

subset.projections

Two functions can be used to subset projections objects. The operator "[" can
be used as for matrices, using the syntax <code>x[i,j]</code> where 'i' is a subset
of dates, and 'j' is a subset of simulations.

Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.

Thibaut Jombart

projections

Project Future Case Incidence

Pierre Nouvellet

Sangeeta Bhatia

Zhian N. Kamvar

Tim Taylor

Stephane Ghozzi

[.projections function

<dl><dt>x</dt>
<dd>An projections object, generated by the function
<code>project</code>.</dd>
<dt>i</dt>
<dd>a subset of dates to retain</dd>
<dt>j</dt>
<dd>a subset of groups to retain</dd>
<dt>...</dt>
<dd>Further arguments passed to other methods (not used).</dd>
<dt>from</dt>
<dd>The starting date; data strictly before this date are discarded.</dd>
<dt>to</dt>
<dd>The ending date; data strictly after this date are discarded.</dd>
<dt>sim</dt>
<dd>(optional) The simulations to retained, indicated as subsets of
the columns of x.</dd></dl>

Arguments

Thibaut Jombart <a href="/link/thibautjombart%40gmail.com?package=projections&version=0.6.0" data-mini-rdoc="projections::thibautjombart@gmail.com">thibautjombart@gmail.com</a>

Author

Subsetting 'projections' objects — [.projections

<dl>

<dt>x</dt>
<dd>An projections object, generated by the function
<code>project</code>.</dd>


<dt>i</dt>
<dd>a subset of dates to retain</dd>


<dt>j</dt>
<dd>a subset of groups to retain</dd>


<dt>...</dt>
<dd>Further arguments passed to other methods (not used).</dd>


<dt>from</dt>
<dd>The starting date; data strictly before this date are discarded.</dd>


<dt>to</dt>
<dd>The ending date; data strictly after this date are discarded.</dd>


<dt>sim</dt>
<dd>(optional) The simulations to retained, indicated as subsets of
the columns of x.</dd>

</dl>

Thibaut Jombart <a href='mailto:thibautjombart@gmail.com'>thibautjombart@gmail.com</a>

[.projections: Subsetting 'projections' objects

Description

Usage

Arguments

Author

See Also